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8e21005d53
* cherry pick the module files from sanger-tol branch and update the test data from official nf-core test datasets * Update modules/blast/tblastn/main.nf, align the emit Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
12 lines
438 B
Text
12 lines
438 B
Text
process {
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withName: BLAST_MAKEBLASTDB {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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ext.args = '-dbtype nucl'
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}
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withName: BLAST_TBLASTN {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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ext.args = '-outfmt 6 -task tblastn -evalue 0.001 -qcov_hsp_perc 60 -max_target_seqs 1'
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}
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}
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