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2e619add87
* created template for `samtools/ampliconclip` (#584) * All tests passing (#584) * Linting fixed (#584) * Final linting fixed (#584) * Optional output flags moved to `input` (#584) * typo fix (#584) * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.4 KiB
YAML
34 lines
1.4 KiB
YAML
## TODO nf-core: Please run the following command to build this file:
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# nf-core modules create-test-yml samtools/ampliconclip
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- name: samtools ampliconclip no stats no rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_no_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: 1c705ebe39f68f1dac164733ae99c9d2
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- name: samtools ampliconclip no stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_with_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: 86c7bfb5378d57b16855c5b399000b2a
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- path: output/samtools/test.cliprejects.bam
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md5sum: 8e2eea2c0005b4d4e77c0eb549599133
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- name: samtools ampliconclip with stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_with_stats_with_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: d96f5eebef0ff4635e68090e89756d4a
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- path: output/samtools/test.cliprejects.bam
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md5sum: ad83a523d6ff1c58caade4ddafbaaed7
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- path: output/samtools/test.clipstats.txt
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md5sum: 6fbde83d658cd2813b79900d33800d1d
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