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c485109d9b
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Add bamAlignCleaner module * Add container tags * Update modules/bamaligncleaner/main.nf
13 lines
392 B
Text
13 lines
392 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BAMALIGNCLEANER } from '../../../modules/bamaligncleaner/main.nf' addParams( options: [:] )
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workflow test_bamaligncleaner {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true) ]
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BAMALIGNCLEANER ( input )
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}
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