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67cc3bd116
* draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
16 lines
506 B
Text
16 lines
506 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_CONCAT } from '../../../../modules/bcftools/concat/main.nf' addParams( options: ['args': '--no-version'] )
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workflow test_bcftools_concat {
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input = [ [ id:'test3' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true) ]
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]
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BCFTOOLS_CONCAT ( input )
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}
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