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7d98bf1d7d
* add mashtree module * remove todo * whitespace adjustment * remove un-reproducible md5sum * Update main.nf * Update main.nf * Update meta.yml * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
461 B
Text
16 lines
461 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MASHTREE } from '../../../modules/mashtree/main.nf' addParams( options: [:] )
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workflow test_mashtree {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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MASHTREE ( input )
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}
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