nf-core_modules/tests/modules/elprep/split/nextflow.config
Matthias De Smet 90b203d3e9
Tool/elprep split (#1533)
* tool: elprep split

* fixes for testing

* fix tests

* fix test outputs

* create test-yaml

* fix suggestions by @jfy133

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-22 10:20:05 +02:00

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName : ELPREP_SPLIT {
ext.args = "--contig-group-size 1 --output-type bam"
}
}