mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
24f0bdd14e
* added module seqkit replace * added when * removed extra line * Update modules/seqkit/replace/main.nf Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * Updated meta * updated indents Co-authored-by: Cipriano <rrn8@cdc.gov> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
24 lines
685 B
Text
24 lines
685 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SEQKIT_REPLACE } from '../../../../modules/seqkit/replace/main.nf'
|
|
include { SEQKIT_REPLACE as SEQKIT_REPLACEUNCOMP } from '../../../../modules/seqkit/replace/main.nf'
|
|
|
|
workflow test_seqkit_replace {
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
|
|
]
|
|
|
|
SEQKIT_REPLACE ( input )
|
|
}
|
|
|
|
workflow test_seqkit_replace_uncomp {
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
|
|
]
|
|
|
|
SEQKIT_REPLACEUNCOMP ( input )
|
|
}
|