mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1,005 B
YAML
39 lines
1,005 B
YAML
name: last_mafswap
|
|
description: Reorder alignments in a MAF file
|
|
keywords:
|
|
- LAST
|
|
- reorder
|
|
- alignment
|
|
- MAF
|
|
tools:
|
|
- last:
|
|
description: LAST finds & aligns related regions of sequences.
|
|
homepage: https://gitlab.com/mcfrith/last
|
|
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/
|
|
tool_dev_url: https://gitlab.com/mcfrith/last
|
|
doi: ""
|
|
licence: ["GPL-3.0-or-later"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- maf:
|
|
type: file
|
|
description: Multiple Aligment Format (MAF) file, optionally compressed with gzip
|
|
pattern: "*.{maf.gz,maf}"
|
|
|
|
output:
|
|
- maf:
|
|
type: file
|
|
description: Multiple Aligment Format (MAF) file, compressed with gzip
|
|
pattern: "*.{maf.gz}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@charles-plessy"
|