nf-core_modules/tests/software/bwa/test.yml
2020-11-24 19:00:11 -06:00

32 lines
1.1 KiB
YAML

- name: Run bwa index
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_index -c tests/config/nextflow.config
tags:
- bwa
- bwa_index
files:
- path: output/bwa/NC_010473.fa.amb
md5sum: 942a990ae872f1c0b8d72dda2db405d5
- path: output/bwa/NC_010473.fa.bwt
md5sum: 7301b52e2ecb893d429a49fa692447ae
- path: output/bwa/NC_010473.fa.pac
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
- path: output/bwa/NC_010473.fa.sa
md5sum: a47dcc92e750e2f16fbd979b8ff9538e
- name: Run bwa mem single-end
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_single_end -c tests/config/nextflow.config
tags:
- bwa
- bwa_mem
files:
- path: output/test_single_end/test.bam
md5sum: 3ee21210bac387e0335008146e4728bc
- name: Run bwa mem paired-end
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
tags:
- bwa
- bwa_mem
files:
- path: output/test_paired_end/test.bam
md5sum: 510d8acc6448c07cdacce8e64ec0904c