mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
40 lines
1.5 KiB
YAML
40 lines
1.5 KiB
YAML
- name: fastp test_fastp_single_end
|
|
command: nextflow run tests/software/fastp -entry test_fastp_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- fastp_single_end
|
|
- fastp
|
|
files:
|
|
- path: output/fastp/test.fastp.html
|
|
contains:
|
|
- "Q20 bases:</td><td class='col2'>12.922000 K (92.984097%)"
|
|
- "single end (151 cycles)"
|
|
- path: output/fastp/test.fastp.log
|
|
contains:
|
|
- "Q20 bases: 12922(92.9841%)"
|
|
- "reads passed filter: 99"
|
|
- path: output/fastp/test.trim.fastq.gz
|
|
md5sum: e2257263668dc8a75d95475099fb472d
|
|
- path: output/fastp/test.fastp.json
|
|
md5sum: e0d856ebb3da9e4462c3ce9683efe01d
|
|
|
|
- name: fastp test_fastp_paired_end
|
|
command: nextflow run tests/software/fastp -entry test_fastp_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- fastp_paired_end
|
|
- fastp
|
|
files:
|
|
- path: output/fastp/test.fastp.html
|
|
contains:
|
|
- "Q20 bases:</td><td class='col2'>25.719000 K (93.033098%)"
|
|
- "The input has little adapter percentage (~0.000000%), probably it's trimmed before."
|
|
- path: output/fastp/test.fastp.log
|
|
contains:
|
|
- "No adapter detected for read1"
|
|
- "Q30 bases: 12281(88.3716%)"
|
|
- path: output/fastp/test.fastp.json
|
|
contains:
|
|
- '"passed_filter_reads": 198'
|
|
- path: output/fastp/test_1.trim.fastq.gz
|
|
md5sum: e2257263668dc8a75d95475099fb472d
|
|
- path: output/fastp/test_2.trim.fastq.gz
|
|
md5sum: 9eff7203596580cc5e42aceab4a469df
|