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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
47 lines
1.2 KiB
YAML
Executable file
47 lines
1.2 KiB
YAML
Executable file
name: preseq_lcextrap
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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keywords:
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- preseq
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- library
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- complexity
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tools:
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- preseq:
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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homepage: http://smithlabresearch.org/software/preseq/
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ['GPL']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- ccurve:
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type: file
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description: File containing output of Preseq lcextrap
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pattern: "*.{ccurve.txt}"
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- log:
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type: file
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description: Log file containing stderr produced by Preseq
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pattern: "*.{log}"
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authors:
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- "@drpatelh"
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