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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
31 lines
833 B
YAML
31 lines
833 B
YAML
name: snpsites
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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keywords:
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- SNPs
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- invariant
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- constant
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tools:
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- snpsites:
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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homepage: https://www.sanger.ac.uk/tool/snp-sites/
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documentation: https://github.com/sanger-pathogens/snp-sites
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input:
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- alignment:
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type: file
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description: fasta alignment file
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pattern: "*.{fasta,fas,fa,aln}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- fasta:
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type: file
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description: Variant fasta file
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pattern: "*.{fas}"
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- constant_sites:
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type: file
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description: Text file containing counts of constant sites
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pattern: "*.{sites.txt}"
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authors:
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- "@avantonder"
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