mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: "elprep_merge"
|
|
description: Merge split bam/sam chunks in one file
|
|
keywords:
|
|
- bam
|
|
- sam
|
|
- merge
|
|
tools:
|
|
- "elprep":
|
|
description: "elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4."
|
|
homepage: "None"
|
|
documentation: "None"
|
|
tool_dev_url: "None"
|
|
doi: ""
|
|
licence: "['AGPL v3']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: List of BAM/SAM chunks to merge
|
|
pattern: "*.{bam,sam}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
#
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bam:
|
|
type: file
|
|
description: Merged BAM/SAM file
|
|
pattern: "*.{bam,sam}"
|
|
|
|
authors:
|
|
- "@matthdsm"
|