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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
58 lines
1.6 KiB
YAML
58 lines
1.6 KiB
YAML
name: dastool_scaffolds2bin
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description: Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format
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keywords:
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- binning
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- das tool
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- table
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- de novo
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- bins
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- contigs
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- assembly
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- das_tool
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tools:
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- dastool:
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description: |
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DAS Tool is an automated method that integrates the results
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of a flexible number of binning algorithms to calculate an optimized, non-redundant
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set of bins from a single assembly.
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homepage: https://github.com/cmks/DAS_Tool
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documentation: https://github.com/cmks/DAS_Tool
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tool_dev_url: https://github.com/cmks/DAS_Tool
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doi: "10.1038/s41564-018-0171-1"
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licence: ["BSD"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Fasta of list of fasta files recommended to be gathered via with .collect() of bins
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pattern: "*.{fa,fas,fasta}"
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- binner:
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type: val
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description: Name of the binning software (optional)
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- extension:
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type: val
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description: Fasta file extension (fa | fas | fasta | ...)
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- scaffolds2bin:
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type: file
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description: tabular scaffolds2bin file for DAS tool input
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pattern: "*.scaffolds2bin.tsv"
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authors:
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- "@maxibor"
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