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f4c69bc427
* bclconvert: initial commit * add most of tool * attempt at adding testing stub * add dockerfile + instructions * add container to module * update readme * more attempts at making stubs work * finish stub run * fix ci issues * more fixes to stub * add read version check to stub * fix some tests * update readme * fix version number * syntax fix * revert edit to output directory * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * update meta.yaml * update thread usage * Update modules/bclconvert/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> * Escape env variable * Update modules/bclconvert/Dockerfile Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com> * fix comments by @Emiller88 * fix task.cpus Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com>
15 lines
611 B
Docker
15 lines
611 B
Docker
# Dockerfile to create container with bcl-convert
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# Push to nfcore/bclconvert:<VER>
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FROM debian:bullseye-slim
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LABEL authors="Matthias De Smet <matthias.desmet@ugent.be>" \
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description="Docker image containing bcl-convert"
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# Disclaimer: this container is not provided nor supported by Illumina
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# 'ps' command is need by some nextflow executions to collect system stats
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# Install procps and clean apt cache
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RUN apt-get update \
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&& apt-get install -y \
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procps \
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&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
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COPY bcl-convert /usr/local/bin/bcl-convert
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RUN chmod +x /usr/local/bin/bcl-convert
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