nf-core_modules/modules/cnvpytor/callcnvs/meta.yml
Ramprasad Neethiraj 2990dc8357 callcnv module
2022-05-03 14:20:05 +02:00

42 lines
1.2 KiB
YAML

name: cnvpytor_callcnvs
description: command line tool for calling CNVs in whole genome sequencing data
- CNV calling
tools:
- cnvpytor:
description: calling CNVs using read depth
homepage: https://github.com/abyzovlab/CNVpytor
documentation: https://github.com/abyzovlab/CNVpytor
tool_dev_url: https://github.com/abyzovlab/CNVpytor
doi: "10.1101/2021.01.27.428472v1"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- pytor:
type: file
description: pytor file containing partitions of read depth histograms using mean-shift method
pattern: "*.{pytor}"
- bin_sizes:
type: string
description: list of binsizes separated by space e.g. "1000 10000" and "1000"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- pytor:
type: file
description: pytor files containing cnv calls
pattern: "*.{pytor}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@sima-r"