mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
409af2f27c
* feat: code polishing * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * code polishing * more code polishing * code polishing * tests for applybqsrspark * fix typo * no need to check md5sum for versions.yml * fix: use correct syntax * code polishing again * add tests for markduplicatesspark * simplify mergevcfs tests * add tests for baserecalibratorspark * fix: path to entry * code polishing * fix linting * simplify module * update meta.yml * fix pair mode * fix: MITO mode * more tests * fix command * bad copy paste * fix typos * fix tests * fix test * update meta.yml * correct versions.yml in all test.yml * code polishing * code polishing * more code polishing * fix args * add tmpdir for all Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
29 lines
1.2 KiB
YAML
29 lines
1.2 KiB
YAML
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
|
|
command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/getpileupsummaries
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.pileups.table
|
|
md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
|
|
command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/getpileupsummaries
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.pileups.table
|
|
md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites_cram
|
|
command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites_cram -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/getpileupsummaries
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.pileups.table
|
|
md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
|
|
- path: output/gatk4/versions.yml
|