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42 lines
1.3 KiB
Text
42 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SVDB_QUERY } from '../../../../modules/svdb/query/main.nf'
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workflow test_svdb_query {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['homo_sapiens']['illumina']['test_sv_vcf'], checkIfExists: true) ]
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]
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vcf_db = [
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file(params.test_data['homo_sapiens']['genome']['gnomad_r2_1_1_sv_vcf_gz'], checkIfExists: true)
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]
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in_occs = ['AC']
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in_frqs = ['AF']
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out_occs = ['gnomad_svAC']
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out_frqs = ['gnomad_svAF']
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SVDB_QUERY ( input, in_occs, in_frqs, out_occs, out_frqs, vcf_db )
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}
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workflow test_svdb_query_multiple {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['homo_sapiens']['illumina']['test_sv_vcf'], checkIfExists: true) ]
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]
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vcf_db = [
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file(params.test_data['homo_sapiens']['genome']['gnomad_r2_1_1_sv_vcf_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['gnomad2_r2_1_1_sv_vcf_gz'], checkIfExists: true)
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]
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in_occs = ['AC','AC']
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in_frqs = ['AF','AF']
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out_occs = ['gnomad_svAC','gnomad_svAC']
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out_frqs = ['gnomad_svAF','gnomad_svAF']
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SVDB_QUERY ( input, in_occs, in_frqs, out_occs, out_frqs, vcf_db )
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}
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