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754db250a0
* remove params statement * add manta/somatic module * fix strelka target bed thing * removing checksums should make this pass * Update modules/manta/somatic/main.nf Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * fix indentation Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
21 lines
849 B
YAML
21 lines
849 B
YAML
- name: strelka germline test_strelka_germline
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command: nextflow run tests/modules/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/test.genome.vcf.gz
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- path: output/strelka/test.genome.vcf.gz.tbi
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- path: output/strelka/test.variants.vcf.gz
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- path: output/strelka/test.variants.vcf.gz.tbi
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- name: strelka germline test_strelka_germline_target_bed
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command: nextflow run tests/modules/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/test.genome.vcf.gz
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- path: output/strelka/test.genome.vcf.gz.tbi
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- path: output/strelka/test.variants.vcf.gz
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- path: output/strelka/test.variants.vcf.gz.tbi
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