millironx/nf-core_modules
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nf-core_modules/tests/modules/gatk4
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FriederikeHanssen 967fb22ded
Update versions (#1292) 
* Update versions

* update checksums + remove variables as input for applyvqsr

* sneak in removal of values and provide them via modules.config

* update another checksum

* more checksums

* move vairable to config

* remove controlfreec, wrong branch

* add line break
2022-02-15 11:29:36 +01:00
..
applybqsr Update versions (#1292) 2022-02-15 11:29:36 +01:00
applyvqsr Update versions (#1292) 2022-02-15 11:29:36 +01:00
baserecalibrator Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
bedtointervallist Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
calculatecontamination Update versions (#1292) 2022-02-15 11:29:36 +01:00
createsequencedictionary Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
createsomaticpanelofnormals Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
estimatelibrarycomplexity Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
fastqtosam Update versions (#1292) 2022-02-15 11:29:36 +01:00
filtermutectcalls Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
gatherbqsrreports Update versions (#1292) 2022-02-15 11:29:36 +01:00
genomicsdbimport Update versions (#1292) 2022-02-15 11:29:36 +01:00
genotypegvcfs Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
getpileupsummaries Update versions (#1292) 2022-02-15 11:29:36 +01:00
haplotypecaller Change intervals to be part of sample specific input (#1189) 2021-12-23 12:58:20 +01:00
indexfeaturefile Update versions (#1292) 2022-02-15 11:29:36 +01:00
intervallisttools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
learnreadorientationmodel Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
markduplicates Update versions (#1292) 2022-02-15 11:29:36 +01:00
mergebamalignment Update mergebam syntax and sample specific unmapped channel (#1238) 2022-01-27 15:30:27 +00:00
mergevcfs Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mutect2 Update intervals (#1278) 2022-02-10 10:34:22 +01:00
revertsam Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
samtofastq Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
splitncigarreads Update versions (#1292) 2022-02-15 11:29:36 +01:00
variantfiltration Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
variantrecalibrator Update versions (#1292) 2022-02-15 11:29:36 +01:00