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7111e571cc
* fix(preseq): Update lcextrap file name * chore(preseq): Bump lcextrap image * feat: Initialize preseq c_curve * docs(preseq): Update documentation
48 lines
1.3 KiB
YAML
Executable file
48 lines
1.3 KiB
YAML
Executable file
name: preseq_lcextrap
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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keywords:
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- preseq
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- library
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- complexity
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tools:
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- preseq:
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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homepage: http://smithlabresearch.org/software/preseq/
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documentation: http://smithlabresearch.org/wp-content/uploads/manual.pdf
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tool_dev_url: https://github.com/smithlabcode/preseq
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doi: ""
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licence: ["GPL"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- lc_extrap:
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type: file
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description: File containing output of Preseq lcextrap
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pattern: "*.{lc_extrap.txt}"
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- log:
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type: file
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description: Log file containing stderr produced by Preseq
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pattern: "*.{log}"
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authors:
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- "@drpatelh"
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- "@Emiller88"
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