nf-core_modules/tests/modules/seqsero2/test.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

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YAML

- name: seqsero2 test_seqsero2
command: nextflow run ./tests/modules/seqsero2 -entry test_seqsero2 -c ./tests/config/nextflow.config -c ./tests/modules/seqsero2/nextflow.config
tags:
- seqsero2
files:
- path: output/seqsero2/results/SeqSero_log.txt
md5sum: d00242dfa734b5abb3622a6048f0b4fb
- path: output/seqsero2/results/SeqSero_result.tsv
contains: ["Sample", "Predicted", "Note"]
- path: output/seqsero2/results/SeqSero_result.txt
contains: ["Sample", "Predicted", "Note"]