millironx/nf-core_modules
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nf-core_modules/tests/modules/samtools
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Matthias De Smet ecece498f1
samtools/*stats*: use prefix for outputs (#1788) 
* use prefix in flagstat

* use prefix in idxstats

* use prefix in stats

* update test.yml
2022-06-16 13:42:01 +02:00
..
ampliconclip Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
bam2fq Remove variable md5sum from the tests 2022-05-05 08:32:45 +02:00
collatefastq Add samtools/collatefastq module (#1536) 2022-04-20 10:05:17 +02:00
convert Generalize Bam2Cram do either conversion 2022-05-09 15:22:54 +02:00
depth Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
faidx Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
fastq update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
fixmate Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
flagstat samtools/*stats*: use prefix for outputs (#1788) 2022-06-16 13:42:01 +02:00
idxstats samtools/*stats*: use prefix for outputs (#1788) 2022-06-16 13:42:01 +02:00
index update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
merge Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
mpileup samtools mpileup now bgzips mpileup files 2022-06-11 13:32:53 +02:00
sort Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
stats samtools/*stats*: use prefix for outputs (#1788) 2022-06-16 13:42:01 +02:00
view fix datatest for stubs 2022-05-06 15:34:18 +02:00