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nf-core_modules/tests/subworkflows/nf-core
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Edmund Miller 2af071ed0d
Fix subworkflows seperate from modules (#933) 
* ci: Remove pytest_subworkflows

* ci(bam_sort_samtools): Depend on paths-filter instead of pytest-workflow

Co-authored-by: Harshil Patel <drpatelhh@gmail.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

* ci: Revert back to one job branch

* ci(align_bowtie2): Run tests that depend on bam_sort_samtools

* ci: Fix anchor not being created yet

* ci: Update sra_fastq tags and pytest_modules

* fix(bam_sort_samtools): Update nextflow.config with params

* test(subworkflows): Update gatk_create_som_pon tags

* ci: Point to subworkflow_hacks branch of nf-core tools

Co-authored-by: Harshil Patel <drpatelhh@gmail.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2021-11-15 18:18:46 +00:00
..
align_bowtie2 Fix subworkflows seperate from modules (#933) 2021-11-15 18:18:46 +00:00
bam_sort_samtools Fix subworkflows seperate from modules (#933) 2021-11-15 18:18:46 +00:00
bam_stats_samtools Subworkflow Infrastructure (#662) 2021-10-08 16:02:42 +01:00
gatk_create_som_pon Fix subworkflows seperate from modules (#933) 2021-11-15 18:18:46 +00:00
sra_fastq feat: add sub-workflow for SRA (#836) 2021-10-14 11:50:31 +02:00