mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
29 lines
764 B
Text
29 lines
764 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.preview.dsl = 2
|
|
|
|
include { BEDTOOLS_SLOP } from '../slop/main.nf' addParams( options: [publish_dir:'test_bed_file'])
|
|
include { BEDTOOLS_REMOVEGENES } from '../removegenes/main.nf' addParams( options: [publish_dir:'test_bed_file'])
|
|
|
|
// Define input channels
|
|
|
|
// Run the workflow
|
|
workflow test_bed_file {
|
|
def input = []
|
|
input = [ [ id:'test', single_end:true ],
|
|
[ file("${baseDir}/input/A.bed", checkIfExists: true),] ]
|
|
|
|
BEDTOOLS_SLOP(
|
|
input,
|
|
file("${baseDir}/input/genome.sizes", checkIfExists: true)
|
|
)
|
|
BEDTOOLS_REMOVEGENES(
|
|
BEDTOOLS_SLOP.out.slopbed,
|
|
file("${baseDir}/input/B.metatranscripts", checkIfExists: true)
|
|
)
|
|
|
|
}
|
|
|
|
workflow {
|
|
test_bed_file()
|
|
}
|