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23 lines
544 B
Text
23 lines
544 B
Text
nextflow.preview.dsl = 2
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process FASTQC {
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input:
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tuple val(name), path(reads)
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val (fastqc_args)
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val (outputdir)
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output:
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tuple val(name), path ("*fastqc*"), emit: all
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path "*.zip", emit: report // e.g. for MultiQC later
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container 'quay.io/biocontainers/fastqc:0.11.8--2'
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publishDir "$outputdir",
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mode: "copy", overwrite: true
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script:
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"""
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fastqc $fastqc_args -q -t 2 $reads
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fastqc --version &> fastqc.version.txt
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"""
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}
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