Charles Plessy 16d20a7cc4 New last/lastdb module to index sequences before alignment. (#476) ... * New last/lastdb module to index sequences before alignment. The `lastdb` command creates a sequence index for the LAST aligner (https://gitlab.com/mcfrith/last). Input can be in FASTA or FASTQ format, and compression is handled automagically. DNA or protein sequences can be indexed. The sequence index is a collection of files sharing the same basename. This module sets the basename to the sample identifier (`$meta.id`) and creates the index in a directory always called `lastdb`. The module's output channel then conveys a copy of the metadata and the path to the `lastdb` directory. Other modules will follow (see Issue #464). The LAST aligner can align proteins to proteins, DNA to DNA and can translate DNA align to proteins. * Remove trailing whitespace. * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update as suggested in PR. * Attempt to pass linting. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-05-02 11:36:31 +01:00
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nextflow.config	change process.time for tests to 2h (#452)	2021-04-16 13:08:03 +01:00
pytest_software.yml	New last/lastdb module to index sequences before alignment. (#476)	2021-05-02 11:36:31 +01:00
test_data.config	Fixes for nanoseq modules (#479)	2021-04-30 15:57:43 +01:00