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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
32 lines
1,023 B
YAML
32 lines
1,023 B
YAML
name: hmmcopy_generatemap
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description: Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all.
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keywords:
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- hmmcopy
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- mapcounter
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- mappability
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tools:
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- hmmcopy:
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description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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homepage: https://github.com/shahcompbio/hmmcopy_utils
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documentation: https://github.com/shahcompbio/hmmcopy_utils
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tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
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doi: ""
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licence: ["GPL v3"]
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bigwig:
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type: file
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description: bigwig file containing the mappability of the genome
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pattern: "*.{map.bw}"
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authors:
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- "@sppearce"
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