mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1 KiB
YAML
34 lines
1 KiB
YAML
name: hmmcopy_mapcounter
|
|
description: mapCounter function from HMMcopy utilities, used to generate mappability in non-overlapping windows from a bigwig file
|
|
keywords:
|
|
- hmmcopy
|
|
- mapcounter
|
|
- cnv
|
|
tools:
|
|
- hmmcopy:
|
|
description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
|
|
homepage: https://github.com/shahcompbio/hmmcopy_utils
|
|
documentation: https://github.com/shahcompbio/hmmcopy_utils
|
|
tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
|
|
doi: ""
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- bigwig:
|
|
type: file
|
|
description: BigWig file with the mappability score of the genome, for instance made with generateMap function.
|
|
pattern: "*.wig"
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
- wig:
|
|
type: file
|
|
description: wig file containing mappability of each window of the genome
|
|
pattern: "*.map.wig"
|
|
|
|
authors:
|
|
- "@sppearce"
|