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44 lines
1.2 KiB
Text
44 lines
1.2 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BEDTOOLS_SLOP as BEDTOOLS_SLOP_S } from '../main.nf' addParams( options: [ publish_dir:'test_asymmetrical' ], header: true )
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include { BEDTOOLS_SLOP as BEDTOOLS_SLOP_AS } from '../main.nf' addParams( options: [ publish_dir:'test_symmetrical' ], header: true )
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// To run with header and pct enabled, type --pct true and --header true with nextflow run command.
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// Run the workflow
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/*
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Test with l/r method
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*/
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workflow test_asymmetrical {
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def input = []
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input = [ [ id:'test', symmetry: false ],
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[ file("${baseDir}/input/A.bed", checkIfExists: true),] ]
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BEDTOOLS_SLOP_AS(
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input,
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file("${baseDir}/input/genome.sizes", checkIfExists: true)
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)
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}
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/*
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Test with b method
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*/
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workflow test_symmetrical {
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def input = []
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input = [ [ id:'test', symmetry: true],
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[ file("${baseDir}/input/A.bed", checkIfExists: true),] ]
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BEDTOOLS_SLOP_S(
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input,
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file("${baseDir}/input/genome.sizes", checkIfExists: true)
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)
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}
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workflow {
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test_asymmetrical()
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test_symmetrical()
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}
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// output has - b 10 and -l 1 -r 10 as test values. pct and header are both false.
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