mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
b5b3ff16ce
* add module for fastq-scan * change fastq to reads * remove uncompressed support Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
13 lines
376 B
Text
13 lines
376 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { FASTQSCAN } from '../../../modules/fastqscan/main.nf' addParams( options: [ args: "-g 30000"] )
|
|
|
|
workflow test_fastqscan {
|
|
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
|
|
|
|
FASTQSCAN ( input )
|
|
}
|