millironx/nf-core_modules
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nf-core_modules/tests/modules/samtools
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Maxime U. Garcia 1abe23e159
Add CRAM to samtools/index (#1049) 
* feat: update samtools/index

* feat: add test

* fix: lint

* fix: output file + md5
2021-11-10 10:30:48 +01:00
..
ampliconclip Add samtools ampliconclip (#590) 2021-07-20 21:31:31 +01:00
bam2fq Bam2fq (#958) 2021-10-29 10:46:34 +02:00
depth add new module samtools/depth (#950) 2021-10-28 12:53:21 +02:00
faidx Fix version commands (#749) 2021-09-27 22:10:37 +01:00
fastq nf-core modules bump-versions for all modules (#630) 2021-07-28 09:10:44 +01:00
fixmate Samtools fixmate module (#991) 2021-11-01 12:12:14 +00:00
flagstat nf-core modules bump-versions for all modules (#630) 2021-07-28 09:10:44 +01:00
idxstats Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00
index Add CRAM to samtools/index (#1049) 2021-11-10 10:30:48 +01:00
merge Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
mpileup nf-core modules bump-versions for all modules (#630) 2021-07-28 09:10:44 +01:00
sort Subworkflow Infrastructure (#662) 2021-10-08 16:02:42 +01:00
stats Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
view Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00