FriederikeHanssen 19035c99d1 Add thread option to samtools modules (#1069) ... * add thread option to samtools modules * fix tests * fix tests * fix tests * Fix naming to fix tests * cpus-1 to account for mainthread * remove thread in ampliconclip, docu doesn't report this param * add -1 to all other applicable samtools modules * Update samtools version * Update checksums * retrigger GHA after update * Update modules/samtools/fastq/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/flagstat/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/index/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/merge/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/stats/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/view/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Fix md5sum fixmate * Fix md5sums * sth funny with the fixmate checksums * more md5sums updates Co-authored-by: Patrick Hüther <patrick.huether@gmail.com>		2021-11-18 22:24:47 +01:00
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__pycache__	Update module: pbccs (#1018)	2021-11-11 14:19:26 +00:00
config	use underscores in anchors and references (#1080)	2021-11-18 18:09:09 +00:00
modules	Add thread option to samtools modules (#1069)	2021-11-18 22:24:47 +01:00
subworkflows/nf-core	Add thread option to samtools modules (#1069)	2021-11-18 22:24:47 +01:00
test_versions_yml.py	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00