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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
name: gffread
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description: Validate, filter, convert and perform various other operations on GFF files
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keywords:
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- gff
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- conversion
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- validation
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tools:
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- gffread:
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description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
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homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
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documentation: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
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tool_dev_url: https://github.com/gpertea/gffread
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doi: 10.12688/f1000research.23297.1
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gff:
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type: file
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description: A GFF file in either the GFF3 or GFF2 format.
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patter: "*.gff"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gtf:
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type: file
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description: GTF file resulting from the conversion of the GFF input file
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pattern: "*.gtf"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@emiller88"
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