santiagorevale 1a4c7cec1b New modules added: issues #200 and #310 (#884) ... * New modules added: issues #200 and #310 * Update main.nf * Update meta.yml * Update tests/modules/gatk4/genotypegvcfs/main.nf * Apply suggestions from code review * Update main.nf * Updating tests for GenomicsDB input and adding the path for this test resource to test_data.config * Some minor changes on one of the test files I forgot to include Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: GCJMackenzie <43276267+GCJMackenzie@users.noreply.github.com>		2021-11-15 15:43:06 +00:00
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applybqsr	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
baserecalibrator	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
bedtointervallist	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
calculatecontamination	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
createsequencedictionary	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
createsomaticpanelofnormals	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
estimatelibrarycomplexity	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
fastqtosam	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
filtermutectcalls	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
genomicsdbimport	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
genotypegvcfs	New modules added: issues #200 and #310 (#884)	2021-11-15 15:43:06 +00:00
getpileupsummaries	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
haplotypecaller	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
indexfeaturefile	New modules added: issues #200 and #310 (#884)	2021-11-15 15:43:06 +00:00
intervallisttools	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
learnreadorientationmodel	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
markduplicates	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
mergebamalignment	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
mergevcfs	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
mutect2	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
revertsam	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
samtofastq	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
splitncigarreads	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00
variantfiltration	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059)	2021-11-11 08:58:59 +01:00