mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
1a4c7cec1b
* New modules added: issues #200 and #310 * Update main.nf * Update meta.yml * Update tests/modules/gatk4/genotypegvcfs/main.nf * Apply suggestions from code review * Update main.nf * Updating tests for GenomicsDB input and adding the path for this test resource to test_data.config * Some minor changes on one of the test files I forgot to include Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: GCJMackenzie <43276267+GCJMackenzie@users.noreply.github.com>
39 lines
1.6 KiB
YAML
39 lines
1.6 KiB
YAML
# We can't use an md5sum or check file contents because:
|
|
# a) the path to the file is embedded inside it,
|
|
# b) the file is binary so we can't check for text inside it.
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/genome.bed.idx
|
|
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/genome.bed.gz.tbi
|
|
md5sum: 2eb6ed0a0b049efe4caa1413089dcd74
|
|
|
|
# We can't use an md5sum or check file contents because:
|
|
# a) the path to the file is embedded inside it,
|
|
# b) the file is binary so we can't check for text inside it.
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/test.genome.vcf.idx
|
|
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/test.genome.vcf.gz.tbi
|
|
md5sum: ea03cd1d1f178eefa656787537053c37
|