nf-core_modules/tests/modules/samtools/index/test.yml
Maxime U. Garcia 1abe23e159
Add CRAM to samtools/index (#1049)
* feat: update samtools/index

* feat: add test

* fix: lint

* fix: output file + md5
2021-11-10 10:30:48 +01:00

26 lines
925 B
YAML

- name: samtools index bai
command: nextflow run tests/modules/samtools/index -entry test_samtools_index_bai -c tests/config/nextflow.config
tags:
- samtools
- samtools/index
files:
- path: output/samtools/test.paired_end.sorted.bam.bai
md5sum: 704c10dd1326482448ca3073fdebc2f4
- name: samtools index crai
command: nextflow run tests/modules/samtools/index -entry test_samtools_index_crai -c tests/config/nextflow.config
tags:
- samtools
- samtools/index
files:
- path: output/samtools/test.paired_end.recalibrated.sorted.cram.crai
md5sum: 537e3d8c937bcc4e34e1cf47cd71d484
- name: samtools index csi
command: nextflow run tests/modules/samtools/index -entry test_samtools_index_csi -c tests/config/nextflow.config
tags:
- samtools
- samtools/index
files:
- path: output/samtools/test.paired_end.sorted.bam.csi
md5sum: 3dd9e3ed959fca075b88bb8dc3cf7dbd