mirror of
https://github.com/MillironX/nf-core_modules.git
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105 lines
4.6 KiB
YAML
105 lines
4.6 KiB
YAML
- name: antismash antismashlite test_antismashlite
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command: nextflow run tests/modules/antismash/antismashlite -entry test_antismashlite -c tests/config/nextflow.config
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tags:
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- antismash/antismashlite
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- antismash
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files:
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- path: output/antismash/test/NZ_CP069563.1.region001.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/NZ_CP069563.1.region002.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/css/bacteria.css
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md5sum: 8b3c2f8b143d5245a5f42f55803c532c
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- path: output/antismash/test/genome.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/genome.json
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contains: ['{"version": "6.0.1", "input_file": "genome.gbff.gz", "records": [{"id": "NZ_CP069563.1", "seq": {"data":']
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- path: output/antismash/test/genome.zip
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- path: output/antismash/test/index.html
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md5sum: 32aaf51315258af3b300d9a5bafd7bdc
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- path: output/antismash/test/js/antismash.js
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md5sum: 58e90c3d783ae014cc3d51849bcb50a2
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- path: output/antismash/test/js/jquery.js
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md5sum: 397754ba49e9e0cf4e7c190da78dda05
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- path: output/antismash/test/js/jquery.tablesorter.min.js
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md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
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- path: output/antismash/test/regions.js
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md5sum: dfc82025379d87df63fbfce734e67725
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- path: output/antismash/test/test.log
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contains: ['antiSMASH version: 6.0.1']
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- path: output/antismash/versions.yml
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md5sum: 7151dfd4d39173338397b2dab50acf8e
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- path: output/untar1/versions.yml
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md5sum: 1e4721017721c45370996318e6b807e5
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- path: output/untar2/versions.yml
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md5sum: a6ae4977a432f3c5ef26687cec8622de
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- path: output/untar3/versions.yml
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md5sum: a5ee00c1c426ed601ff654891ba0f645
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- name: antismash antismashlite test_prokka_antismashlite
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command: nextflow run tests/modules/antismash/antismashlite -entry test_prokka_antismashlite -c tests/config/nextflow.config
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tags:
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- antismash
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- antismash/antismashlite
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files:
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- path: output/antismash/test/NZ_CP069563.1.region001.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/NZ_CP069563.1.region002.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/css/bacteria.css
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md5sum: 8b3c2f8b143d5245a5f42f55803c532c
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- path: output/antismash/test/index.html
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md5sum: 3773c3ec61fb1e8cd9a67791b37d9b79
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- path: output/antismash/test/js/antismash.js
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md5sum: 58e90c3d783ae014cc3d51849bcb50a2
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- path: output/antismash/test/js/jquery.js
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md5sum: 397754ba49e9e0cf4e7c190da78dda05
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- path: output/antismash/test/js/jquery.tablesorter.min.js
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md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
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- path: output/antismash/test/regions.js
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contains: [ '"seq_id": "NZ_CP069563.1"' ]
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- path: output/antismash/test/test.gbk
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contains: ['/tool="antismash"']
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- path: output/antismash/test/test.json
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contains: ['"id": "NZ_CP069563.1"']
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- path: output/antismash/test/test.log
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contains: ['antiSMASH status: SUCCESS']
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- path: output/antismash/test/test.zip
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- path: output/antismash/versions.yml
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md5sum: da6bed0032d0f7ad4741e0074ad6b1ff
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- path: output/gunzip/genome.fna
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md5sum: dafd38f5454b54fbea38245d773062a5
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- path: output/gunzip/versions.yml
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md5sum: 93ce587e93791c8cf500482d42b6069f
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- path: output/prokka/test/test.err
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md5sum: 194fd8a1d1cde9919841a1afd4414760
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- path: output/prokka/test/test.faa
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md5sum: 8fefbfa7860f280cc881c3a3b377d6da
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- path: output/prokka/test/test.ffn
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md5sum: 9c4d4d7dc28625bcb13c6fbd27ca13c3
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- path: output/prokka/test/test.fna
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md5sum: 96aa7707b864499745e8946f169ae8e0
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- path: output/prokka/test/test.fsa
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md5sum: dbe7d3d43d46920802d2aec5cd177ddc
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- path: output/prokka/test/test.gbk
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md5sum: 286ea011a64c0d281de3981ed2f296ff
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- path: output/prokka/test/test.gff
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md5sum: 9f733b702454e7750b7d4686369fe7e4
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- path: output/prokka/test/test.log
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contains: ["Annotation finished successfully."]
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- path: output/prokka/test/test.sqn
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md5sum: a901ac190675f976e373219f0191d067
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- path: output/prokka/test/test.tbl
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md5sum: 98f3b705f47b40255631ae43823e8271
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- path: output/prokka/test/test.tsv
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md5sum: 26e8aa4b2212f320e82b6db7c93d4461
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- path: output/prokka/test/test.txt
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md5sum: aea5834a64dff02d3588cecbe25c3914
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- path: output/prokka/versions.yml
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md5sum: 286ac10895a9f26ee8dd933dbc5d2b1c
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- path: output/untar1/versions.yml
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md5sum: 6c1bfedb010be6dfee273aa267b1cae3
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- path: output/untar2/versions.yml
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md5sum: 65db3fe9c809e5371158deae444fb343
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- path: output/untar3/versions.yml
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md5sum: 713d3aa0ee24ff680a8024cc53765d60
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