mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
1cf207a5b6
* 📦 NEW: Add isoseq3/cluster module * 🐛FIX: Fix reports channel and add .pbi to it * 🐛FIX: Fix report channel definition * 👌IMPROVE: Move .pbi file into reports channel * 👌IMPROVE: remove --use_qvs option from command line * 👌 IMPROVE: Add in addParams removed options from command line * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 👌 IMPROVE: The module accept one channel (primers moved into the first channel) * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: add singletons parameter and improve outputs * 🐛 FIX: Update test with last module model * 👌 IMPROVE: Add test tag * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update test data config * 👌 IMPROVE: Remove pbi from input files * 👌 IMPROVE: Remove unused index * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fill contains args * 📦 NEW: Add isoseq3/cluster module * 🐛FIX: Fix reports channel and add .pbi to it * 🐛FIX: Fix report channel definition * 👌IMPROVE: Move .pbi file into reports channel * 👌IMPROVE: remove --use_qvs option from command line * 👌 IMPROVE: Add in addParams removed options from command line * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 👌 IMPROVE: The module accept one channel (primers moved into the first channel) * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: add singletons parameter and improve outputs * 🐛 FIX: Update test with last module model * 👌 IMPROVE: Add test tag * 👌 IMPROVE: Update test data config * 👌 IMPROVE: Remove pbi from input files * 👌 IMPROVE: Remove unused index * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fill contains args * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Update code to new versions capture + better output channels * 👌 IMPROVE: Update with new versions.yml file * 🐛 FIX: Update meta.yml + correct typos * 👌 IMPROVE: Clean output file names + correct typo * 🐛 FIX: Remove bamtools/split module from isoseq3/cluster * 🐛 FIX: Update output filename pattern input filename and output filename were the same * 👌 IMPROVE: Update meta.yml
28 lines
1.3 KiB
YAML
28 lines
1.3 KiB
YAML
- name: isoseq3 cluster test_isoseq3_cluster
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command: nextflow run tests/modules/isoseq3/cluster -entry test_isoseq3_cluster -c tests/config/nextflow.config
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tags:
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- isoseq3
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- isoseq3/cluster
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files:
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- path: output/isoseq3/test.transcripts.bam
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md5sum: eb36697688099c757ef4196f54ad7d7a
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- path: output/isoseq3/test.transcripts.bam.pbi
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md5sum: db70cee03421822e9b8f9fb6b228f461
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- path: output/isoseq3/test.transcripts.cluster
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md5sum: d5059d856763fc5591332980bfc0d57b
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- path: output/isoseq3/test.transcripts.cluster_report.csv
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md5sum: 342d97dc10aedf80a45977edcb491c62
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- path: output/isoseq3/test.transcripts.hq.bam
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md5sum: 4c5f4ffb429107c9c9578419e07d6987
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- path: output/isoseq3/test.transcripts.hq.bam.pbi
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md5sum: 39ac3e957c8d55b0ce3f425d63baa154
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- path: output/isoseq3/test.transcripts.lq.bam
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md5sum: 710ca4bc58ac039d76775460e1c822a0
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- path: output/isoseq3/test.transcripts.lq.bam.pbi
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md5sum: 9b32036553bf3dced3065e6d0f36aef9
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- path: output/isoseq3/test.transcripts.singletons.bam
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md5sum: 0288577406b9d1e7356de9b4d7c2bb7c
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- path: output/isoseq3/test.transcripts.singletons.bam.pbi
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md5sum: 8e0e0681179c0c36209b49fa60783841
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- path: output/isoseq3/test.transcripts.transcriptset.xml
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contains: [ 'PacBio.DataSet.TranscriptSet' ]
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