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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: ucsc_liftover
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description: convert between genome builds
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keywords:
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- liftOver
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tools:
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- ucsc:
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description: Move annotations from one assembly to another
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homepage: http://hgdownload.cse.ucsc.edu/admin/exe/
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ["varies; see http://genome.ucsc.edu/license"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: Browser Extensible Data (BED) file
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pattern: "*.{bed}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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- lifted:
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type: file
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description: BED file containing successfully lifted variants
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pattern: "*.{lifted.bed}"
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- unlifted:
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type: file
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description: BED file containing variants that couldn't be lifted
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pattern: "*.{unlifted.bed}"
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authors:
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- "@nebfield"
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