Anan Ibrahim 1f3f2b18bb Add new module macrel/contigs (#1109) ... * Add new module macrel/contigs * removed trailing whitespace * removed whitespace * linting cleanup * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Updated the test.yml It didnt upload the updated version earlier for some reason :( * Update test.yml * Update test.yml * Update test.yml as generated by pytest * Update test.yml * updated the version issue * Update tests/modules/macrel/contigs/test.yml * Update modules/macrel/contigs/main.nf * Update modules/macrel/contigs/main.nf * Update pytest_modules.yml * Update pytest_modules.yml * Update modules/macrel/contigs/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Zipped all fasta outputs * Update main.nf * Update test.yml * Update test.yml * Update main.nf * Update main.nf (gzip -n) * Update test.yml * Update main.nf * Update main.nf * Update test.yml * Update tests/modules/macrel/contigs/test.yml * Update modules/macrel/contigs/main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: darcy220606 <ananhamido@hotmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>		2021-12-09 13:17:50 +01:00
..
abacas	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
adapterremoval	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
agrvate	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
allelecounter	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
amps	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
arriba	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
artic	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
assemblyscan	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ataqv/ataqv	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bakta	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
bamaligncleaner	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bamtools/split	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bamutil/trimbam	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bandage/image	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bbmap	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bcftools	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
bedtools	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
bismark	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
blast	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bowtie	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bowtie2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
bwa	Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)	2021-12-08 14:31:27 +00:00
bwamem2	Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)	2021-12-08 14:31:27 +00:00
bwameth	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
cat	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
cellranger	Add Cell Ranger mkfastq, mkgtf, and count (#979)	2021-12-02 14:27:20 +00:00
checkm/lineagewf	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
chromap	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
clonalframeml	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
cmseq/polymut	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
cnvkit/batch	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
cooler	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
csvtk	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
custom	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
cutadapt	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
damageprofiler	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
dastool	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
dedup	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
deeptools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
delly/call	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
diamond	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
dragmap	feat: update dragmap to follow new bwa/mem + bwamem2/mem logic (#1146)	2021-12-08 23:19:37 +01:00
dragonflye	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
dshbio	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ectyper	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
emmtyper	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ensemblvep	greatly simplify syntax (#1121)	2021-12-07 11:18:12 +01:00
expansionhunter	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
fargene	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
fastani	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
fastp	Update meta.yml by fixing html pattern expected (#1113)	2021-12-05 21:45:09 +00:00
fastqc	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
fastqscan	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
fasttree	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
fgbio	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
filtlong	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
flash	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
freebayes	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
gatk4	add gatk4/gatherbqsr (#1130)	2021-12-08 23:43:36 +01:00
genmap	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
genrich	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
gffread	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
glnexus	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
graphmap2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
gstama	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
gtdbtk/classifywf	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
gubbins	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
gunc	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
gunzip	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
hicap	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
hifiasm	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
hisat2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
hmmcopy	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
hmmer/hmmalign	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
homer	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
idr	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
imputeme/vcftoprs	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
iqtree	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
ismapper	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
isoseq3	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ivar	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
jupyternotebook	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
kallisto/index	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
kallistobustools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
khmer/normalizebymedian	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
kleborate	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
kraken2/kraken2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
krona	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
last	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
leehom	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
lima	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
lissero	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
lofreq	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
macrel/contigs	Add new module macrel/contigs (#1109)	2021-12-09 13:17:50 +01:00
macs2/callpeak	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
malt	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
maltextract	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
manta	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
mapdamage2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
mash/sketch	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
mashtree	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
maxbin2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
medaka	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
megahit	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
meningotype	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
metabat2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
metaphlan3	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
methyldackel	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
minia	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
miniasm	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
minimap2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
mlst	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
mosdepth	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
msisensor	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
mtnucratio	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
multiqc	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
mummer	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
muscle	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
nanolyse	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
nanoplot	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
ncbigenomedownload	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
nextclade	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
ngmaster	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
nucmer	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
optitype	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
pairix	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
pairtools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
pangolin	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
paraclu	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
pbbam/pbmerge	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
pbccs	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
peddy	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
phantompeakqualtools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
phyloflash	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
picard	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
pirate	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
plasmidid	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
plink	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
plink2/vcf	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
pmdtools/filter	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
porechop	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
preseq/lcextrap	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
prodigal	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
prokka	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
pycoqc	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
pydamage	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
qcat	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
qualimap	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
quast	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
racon	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
rapidnj	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
rasusa	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
raxmlng	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
rmarkdownnotebook	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
roary	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
rsem	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
rseqc	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
salmon	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
samblaster	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
samtools	feat: add original input as optional output channel (#1147)	2021-12-09 11:04:53 +01:00
scoary	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
seacr/callpeak	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
seqkit/split2	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
seqsero2	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
seqtk	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
sequenzautils	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
seqwish/induce	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
shovill	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
snpdists	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
snpeff	greatly simplify syntax (#1121)	2021-12-07 11:18:12 +01:00
snpsites	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
sortmerna	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
spades	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
spatyper	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
sratools	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
staphopiasccmec	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
star	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
strelka	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
stringtie	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
subread/featurecounts	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
tabix	feat: emited channel should be gz_tbi and not only tbi (#1118)	2021-12-07 10:12:58 +01:00
tbprofiler/profile	Replace remaining task.ext.suffix with task.ext.prefix (#1117)	2021-12-07 15:00:43 +01:00
tiddit	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
trimgalore	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ucsc	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
ultra/pipeline	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
umitools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
unicycler	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
untar	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
unzip	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
variantbam	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
vcftools	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
yara	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00