mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
bb90e4fb78
* Remove customisation from bcftools modules * Add save_mpileup option to bcftools/mpileup * Remove params.save_mpileup from ivar/consensus * Update meta.ymls
17 lines
541 B
Text
17 lines
541 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BCFTOOLS_CONSENSUS } from '../../../../modules/bcftools/consensus/main.nf'
|
|
|
|
workflow test_bcftools_consensus {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
BCFTOOLS_CONSENSUS ( input )
|
|
}
|