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ce8c781bb4
* Provide BAI when running rseqc/tin * Add md5sum * Add proper md5sums * md5sum not md5 * Add xls to meta.yml
18 lines
538 B
Text
18 lines
538 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RSEQC_TIN } from '../../../../modules/rseqc/tin/main.nf'
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workflow test_rseqc_tin {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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]
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bed = file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
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RSEQC_TIN ( input, bed )
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}
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