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f3ffa69b8d
* feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
15 lines
431 B
Text
15 lines
431 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DRAGMAP_HASHTABLE } from '../../../../modules/dragmap/hashtable/main.nf'
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workflow test_dragmap_hashtable {
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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DRAGMAP_HASHTABLE ( fasta )
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}
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// TODO Add test using alt-masked bed file
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// https://github.com/Illumina/dragmap#build-hash-table-using-an-alt-masked-bed-file
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