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3eff67f54d
* added new module snpsift/split * added options.args * added .vcf.gz to input * removed test and updated to new NF DSL2 syntax * Updated to new NF DSL2 syntax * added option to join vcf files Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
32 lines
903 B
Text
32 lines
903 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SNPSIFT_SPLIT } from '../../../../modules/snpsift/split/main.nf'
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workflow test_snpsift_split_base {
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input = [ [ id:'test', split:true], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_rnaseq_vcf'], checkIfExists: true) ]
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SNPSIFT_SPLIT ( input )
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}
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workflow test_snpsift_split_gz {
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input = [ [ id:'test', split:true ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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SNPSIFT_SPLIT ( input )
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}
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workflow test_snpsift_join {
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input = [ [ id:'test', split:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf'], checkIfExists: true) ]
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]
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SNPSIFT_SPLIT ( input )
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}
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