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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: bcftools_reheader
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description: Reheader a VCF file
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keywords:
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- reheader
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- vcf
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- update header
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tools:
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- reheader:
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description: |
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Modify header of VCF/BCF files, change sample names.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: http://samtools.github.io/bcftools/bcftools.html#reheader
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doi: 10.1093/gigascience/giab008
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF/BCF file
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pattern: "*.{vcf.gz,vcf,bcf}"
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- fai:
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type: file
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description: Fasta index to update header sequences with
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pattern: "*.{fai}"
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- header:
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type: file
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description: New header to add to the VCF
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pattern: "*.{header.txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: VCF with updated header
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pattern: "*.{vcf.gz}"
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authors:
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- "@bjohnnyd"
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