mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
55 lines
1.4 KiB
YAML
55 lines
1.4 KiB
YAML
name: delly_call
|
|
description: Call structural variants
|
|
keywords:
|
|
- genome
|
|
- structural
|
|
- variants
|
|
- bcf
|
|
|
|
tools:
|
|
- delly:
|
|
description: Structural variant discovery by integrated paired-end and split-read analysis
|
|
homepage: https://github.com/dellytools/delly
|
|
documentation: https://github.com/dellytools/delly/blob/master/README.md
|
|
tool_dev_url: None
|
|
doi: "DOI:10.1093/bioinformatics/bts378"
|
|
licence: ["BSD-3-Clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM file from alignment must be sorted, indexed, and duplicate marked
|
|
pattern: "*.{bam}"
|
|
- fasta:
|
|
type: file
|
|
description: The reference fasta file
|
|
- fai:
|
|
type: file
|
|
description: Index of reference fasta file to identify split-reads
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bcf:
|
|
type: file
|
|
description: BCF format
|
|
pattern: "*.{bcf}"
|
|
- csi:
|
|
type: file
|
|
description: A generated csi index that matches the bcf output
|
|
pattern: "*.{bcf.csi}"
|
|
|
|
authors:
|
|
- "@projectoriented"
|