mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
50 lines
1.4 KiB
YAML
50 lines
1.4 KiB
YAML
name: adapterremoval
|
|
description: Trim sequencing adapters and collapse overlapping reads
|
|
keywords:
|
|
- trimming
|
|
- adapters
|
|
- merging
|
|
- fastq
|
|
tools:
|
|
- adapterremoval:
|
|
description: The AdapterRemoval v2 tool for merging and clipping reads.
|
|
homepage: https://github.com/MikkelSchubert/adapterremoval
|
|
documentation: https://adapterremoval.readthedocs.io
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false, collapse:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
respectively.
|
|
pattern: "*.{fq,fastq,fg.gz,fastq.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input adapter trimmed FastQ files of size 1 or 2 for
|
|
single-end or collapsed data and paired-end data, respectively.
|
|
pattern: "*.{fastq.gz}"
|
|
- log:
|
|
type: file
|
|
description: AdapterRemoval log file
|
|
pattern: "*.log"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@maxibor"
|