mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
90b203d3e9
* tool: elprep split * fixes for testing * fix tests * fix test outputs * create test-yaml * fix suggestions by @jfy133 Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
name: "elprep_split"
|
|
description: Split bam file into manageable chunks
|
|
keywords:
|
|
- bam
|
|
- split by chromosome
|
|
tools:
|
|
- "elprep":
|
|
description: "elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4."
|
|
homepage: "https://github.com/ExaScience/elprep"
|
|
documentation: "https://github.com/ExaScience/elprep"
|
|
tool_dev_url: "https://github.com/ExaScience/elprep"
|
|
doi: "10.1371"
|
|
licence: "['AGPL v3']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: List of BAM/SAM files
|
|
pattern: "*.{bam,sam}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
#
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bam:
|
|
type: file
|
|
description: List of split BAM/SAM files
|
|
pattern: "*.{bam,sam}"
|
|
|
|
authors:
|
|
- "@matthdsm"
|