mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
b5b3ff16ce
* add module for fastq-scan * change fastq to reads * remove uncompressed support Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
43 lines
1 KiB
YAML
43 lines
1 KiB
YAML
name: fastqscan
|
|
description: FASTQ summary statistics in JSON format
|
|
keywords:
|
|
- fastq
|
|
- summary
|
|
- statistics
|
|
tools:
|
|
- fastqscan:
|
|
description: FASTQ summary statistics in JSON format
|
|
homepage: https://github.com/rpetit3/fastq-scan
|
|
documentation: https://github.com/rpetit3/fastq-scan
|
|
tool_dev_url: https://github.com/rpetit3/fastq-scan
|
|
doi: ""
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: FASTQ file
|
|
pattern: "*.{fastq.gz,fq.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- json:
|
|
type: file
|
|
description: JSON formatted file of summary statistics
|
|
pattern: "*.json"
|
|
|
|
authors:
|
|
- "@rpetit3"
|